稻瘟病菌与水稻互作机制研究；

巨菌草梨孢菌与巨菌草互作机制研究；

巨菌草遗传资源在育种上的应用。

植物与微生物互作前沿（研究生）

1.   国家重点研发计划项目子课题，2023YFD1400201，稻瘟病菌群体变异与监测预警，2023/12-2027/12，360万元，在研，参加；

2.   国家自然科学基金委委员会，面上项目，32172365，小染色体介导的稻瘟病菌无毒基因变异机制研究，2022/01-2025/12，58万元，在研，主持；

3.   福建农林大学科技创新项目，原始创新与交叉学科专项，CXZX2020153D，稻瘟病菌延伸复合物蛋白Elp3调控自噬的机制研究，2021/01-2023/12，7万元，在研，主持；

4.   福建省自然科学基金计划项目，引导性项目，2019N0003，基于无毒基因变异检测的稻瘟病监测与绿色防控技术研究，2019/07-2022/06，15万元，已结题，参加；

5.   福建省自然科学基金计划项目，面上项目，2019J01060713，巨菌草基于根系发育的抗旱机制研究，2019/07-2022/06，7.0万元，在研，主持；

6.   福建农林大学科技创新项目，基础或应用基础研究，CXZX2018051，稻瘟病菌无毒蛋白AVR-Pikh的水稻靶标蛋白的功能分析， 2019/01-2020/12，3.37万元，已结题，主持；

7.   福建农林大学科技创新项目，基础或应用基础研究，CXZX2018052，水稻宿主影响闽台稻瘟病菌致灾机制的研究，2019/01-2020/12，43.65万元，已结题，主持；

8.   福建省教育厅，中青年教师教育科研项目，JAT170175，遗传转化改良巨菌草耐寒品质的研究，2018/01-2020/12，2.0万元，已结题，主持；

9.   闽台作物有害生物生态防控国家重点实验室，开放课题基金，SKB2017002，巨菌草中抗稻瘟病NBS-LRR基因的克隆与鉴定，2017/05-2019/04，6.0万元，已结题，主持；

10.国家自然科学基金委员会，面上项目，31770156，稻瘟病菌转座元件转座活性的表观调控及其与无毒基因功能关系的研究，2018/01-2021/12，65万元，已结题，参加；

11.国家自然科学基金委员会，青年基金项目，31401692，稻瘟病菌无毒基因Avr-Pikh的克隆与分析，2015/01-2017/12，24万元，已结题，参加；

12.国家自然科学基金委员会，联合基金项目，U1305211，基于闽台稻瘟病菌群体演化特点探讨水稻持久抗瘟生态防控策略，2014/01-2017/12，280万元，已结题，参加。

已发表的文章：

（一）第一作者和通讯作者文章

(1)  Fang Zhenyu, Li Yuyong, Huang Jianqiang, Chen Mmeilian, Chen Xiali, Mo Xueting, Zhong Zhenhui, Li Xiuxiu, Lu Guodong, Lin Guifang, Wang Zonghua and Zheng Huakun (2025). Experimental insights into genome reconstruction driven by horizontal transfer of supernumerary chromosomes in Magnaporthe oryzae. New Phytol: doi: 10.1111/nph.70438.

(2)  Fang Zhenyu, Li Yuyong, Huang Jianqiang, Wang Jianhong, Lian Xiwen, Lin Shuhui, Wang Zonghua, Zhu Yongsheng and Zheng Huakun (2025). The Xenopyricularia zizaniicola exhibits a genome architecture distinct to the two-speed genome. Microbiol Spectr 13(7): e0036225. doi: 0036210.0031128/spectrum.0000362-0036225.

(3)  Lin Guifang, Zheng Huakun, Koo Dal-Hoe, Wang Zonghua, Cook David, Valent Barbara and Liu Sanzhen (2025). Highly dynamic supernumerary mini-chromosomes in a Magnaporthe oryzae strain contributes to cellular variance of genomic content. Fungal Genetics and Biology 180: 104020.

(4)  Liu Yuanhao, Sun Ting, Li Yuyong, Huang Jianqiang, Wang Xianjun, Bai Huimin, Hu Jiayi, Zhang Zifan, Wang Shuai, Zhang Dongmei, Li Xiuxiu, Wang Zonghua, Zheng Huakun and Lin Guifang (2025). Proteomic analysis revealed the function of PoElp3 in development, pathogenicity, and autophagy through the tRNA-mediated translation efficiency in the rice blast fungus. Journal of Integrative Agriculture 24(4): 1515-1528.

(5)  Li Yuyong, Wang Xianjun, Huang Jianqiang, Fang Zhenyu, Lian Xiwen, Lu Gguodong, Lin Guifang, Wang Zonghua, Wang Baohua, Li Xiuxiu and Zheng Huakun (2024). Near complete assembly of Pyricularia penniseti infecting Cenchrus grass identified its eight core chromosomes. Sci Data 11(1): 1186. doi: 1110.1038/s41597-41024-04035-z.

(6)  Lin Lianyu, Sun Ting, Guo Jiayuan, Lin Lili, Chen Meilian, Wang Zhe, Bao Jiandong, Norvienyeku Justice, Zhang Dongmei, Han Yijuan, Lu Guodong, Rensing Christopher, Zheng Huakun, Zhong Zhenhui and Wang Zonghua (2024). Transposable elements impact the population divergence of rice blast fungus Magnaporthe oryzae. mBio 15(5): e0008624. doi: 0008610.0001128/mbio.0000086-0008624.

(7)  Zheng Huakun, Wang Baiyu, Hua Xiuting, Gao Ruiting, Wang Yuhao, Zhang Zixin, Zhang Yixing, Mei Jing, Huang Yongji, Huang Yumin, Lin Hui, Zhang Xingtan, Lin Dongmei, Lan Siren, Liu Zhongjian, Lu Guodong, Wang Zonghua, Ming Ruiguang, Zhang Jisen and Lin Zhanxi (2023). A near-complete genome assembly of the allotetrapolyploid Cenchrus fungigraminus (JUJUNCAO) provides insights into its evolution and C4 photosynthesis. Plant Commun 4(5): 100633. doi: 100610.101016/j.xplc.102023.100633.

(8)  Bao Jiandong, Wang Zhe, Chen Meilian, Chen Shijie, Chen Xiaomin, Xie Jiahui, Tang Wei, Zheng Huakun and Wang Zonghua (2022). Pan-Genomics Reveals a New Variation Pattern of Secreted Proteins in Pyricularia oryzae. J Fungi (Basel) 8(12).

(9)  Zhang Limei, Chen Shuting, Qi Min, Cao Xueqi, Liang Nan, Li Qian, Tang Wei, Lu Guodong, Zhou Jie, Yu Wenying, Wang Zonghua and Zheng Huakun (2021). The putative elongator complex protein Elp3 is involved in asexual development and pathogenicity by regulating autophagy in the rice blast fungus. Journal of Integrative Agriculture 20(11): 2944-2956.

(10)        Zhenhui Zhong, Lianyu Lin, Meilian Chen, Lili Lin, Xiaofeng Chen, Yahong Lin, Xi Chen, Zonghua Wang, Justice Norvienyeku and Huakun Zheng (2019). Expression divergence as an evolutionary alternative mechanism adopted by two rice subspecies against rice blast infection. Rice.

(11)        Hu Hongli, Zheng Huakun, Yang Tao, Chen Xiaofeng, Ye Wenyu, Lu Guodong, Lin Zhanxi and Wang Zonghua (2018). First report of Pyricularia leaf spot on Pennisetum giganteum (JUJUNCAO) in China. Plant Disease 102(3): 374.

(12)        Zheng Huakun, Zhong Zhenhui, Shi Mingyue, Zhang Limei, Lin Lianyu, Hong Yonghe, Fang Tian, Zhu Yangyan, Guo Jiayuan, Fang Jie, Lin Hui, Norvienyeku Justice, Chen Xiaofeng, Lu Guodong, Hu Hongli and Wang Zonghua (2018). Comparative genomic analysis revealed rapid differentiation in the pathogenicity-related gene repertoires between Pyricularia oryzae and Pyricularia penniseti isolated from a Pennisetum grass. BMC Genomics 19(1): 927. doi: 910.1186/s12864-12018-15222-12868.

(13)        Zheng Huakun, Chen Simiao, Chen Xiaofeng, Liu Shuyan, Dang Xie, Yang Chengdong, Giraldo Martha. C, Oliveira-Garcia Ely, Zhou Jie, Wang Zonghua and Valent Barbara (2016). The Small GTPase MoSec4 Is Involved in Vegetative Development and Pathogenicity by Regulating the Extracellular Protein Secretion in Magnaporthe oryzae. Front Plant Sci 7: 1458. DOI: 1410.3389/fpls.2016.01458.

(14)        Zheng Huakun, Li Sujuan, Ren Bo, Zhang Jian, Ichii Masahiko, Taketa Shin, Tao Yuezhi, Zuo Jianru and Wang Hua (2013). LATERAL ROOTLESS2, a cyclophilin protein, regulates lateral root initiation and auxin signaling pathway in rice. Mol Plant 6(5): 1719-1721.

（二）非第一作者、非通讯作者文章

(1) Hongli Hu, Huakun Zheng, Tao Yang, Xiaofeng Chen, Wenyu Ye, Guodong Lu, Zhanxi Lin and Zonghua Wang^*, First Report of Pyricularia Leaf Spot on Pennisetum giganteum (Jujuncao) in China, Plant Disease, 2018, 102(3): 374.

(2) Zhenhui Zhong ^#, Justice Norvienyeku ^#, Meilian Chen^#, Jiandong Bao, Lianyu Lin, Liqiong Chen, Yahong Lin, Xiaoxian Wu, Zena Cai, Qi Zhang, Xiaoye Lin, Yonghe Hong, Jun Huang, Linghong Xu, Honghong Zhang, Long Chen, Wei Tang, Huakun Zheng, Xiaofeng Chen, Yanli Wang, Bi Lian, Liangsheng Zhang, Haibao Tang, Guodong Lu, Daniel J. Ebbole, Baohua Wang^*, Zonghua Wang^*, Directional Selection from Host Plants Is a Major Force Driving Host Specificity in Magnaporthe Species, Scientific Reports, 2016.5.6, 6: DOI: 10.1038/srep25591

(3) Wenyu Ye, Xiao Chen, Zhenhui Zhong, Meilian Chen, Lei Shi, Huakun Zheng, Yahong Lin, Dongmei Zhang, Guodong Lu, Guangpu Li, Jisheng Chen^*, Zonghua Wang^*, Putative RhoGAP proteins orchestrate vegetative growth, conidiogenesis and pathogenicity of the rice blast fungus Magnaporthe oryzae, Fungal Genetics and Biology, 2014.6, 67: 37~50

(4) Wilfred Mabeche Anjago, Tengshen Zhou, Honghong Zhang, Mingyue Shi, Tao Yang, Huakun Zheng, Zonghua Wang^*, Regulatory network of genes associated with stimuli sensing, signal transduction and physiological transformation of appressorium in Magnaporthe oryzae, Mycology, 2018, 9(3): 211~222

(5) Xie Qingjun, Liang Yan, Zhang Jian, Zheng Huakun, Dong Guojun, Qian Qian^*, Zuo Jianru^*, Involvement of a Putative Bipartite Transit Peptide in Targeting Rice Pheophorbide a Oxygenase into Chloroplasts for Chlorophyll Degradation during Leaf Senescence, Journal of Genetics and Genomics, 2016.3.20, 43(3): 145~154

(6) Jiaoteng Bai^*, Xudong Zhu, Qing Wang, Jian Zhang, Hongqi Chen, Guojun Dong, Lei Zhu, Huakun Zheng, Qingjun Xie, Jinqiang Nian, Fan Chen, Ying Fu, Qian Qian, Jianru Zuo, Rice TUTOU1 Encodes a Suppressor of cAMP Receptor-Like Protein That Is Important for Actin Organization and Panicle Development. , Plant Physiology, 2015.10, 169(2): 1179~1191

(7) Hongwei Jing^#, Xiaolu Yang^#, Jian Zhang, Xuehui Liu, Huakun Zheng, Guojun Dong, Jinqiang Nian, Jian Feng, Bin Xia, Qian Qian, Jiayang Li, JianruZuo^*, Peptidyl-prolyl isomerization targets rice Aux/IAAs for proteasomal degradation during auxin signalling, Nature Communications, 2015.6.22, 6: DOI: 10.1038/ncomms8395

(8) Hongjia Liu, Huakun Zheng, Hua Wang, Peng Guo, Jianru Zuo, Yuezhi Tao^*, Fine-mapping of SRT7 for short roots and identification of its candidate in rice, Chinese Science Bulletin, 2011, 56(31): 3296~3300

(9) 许明, 黄昕, 郑华坤, 苏永昌, 郑祥正, 程祖锌, 郑金贵^*, 高世代转P_(SAG12)-IPT基因水稻生育后期的延衰性, 福建农林大学学报(自然科学版), 2010.1.18, (01): 1~5