1. Binghui Zhang, Ting Yang, Chengliang Chen, Gang Gu, Xiangming Lin and Xiaofang Xie* Multi-omics analysis reveals the alleviating effect of oxidation remediation on tobacco quinclorac stress. Front. Microbiol. 2025, 16:1625585.
2. Ting Yang, Xiaolu Lin, Rui Chen, Ruiqi Wang, and Xiaofang Xie. Integrated metagenomics and metabolomics analysis reveals dynamic changes of microbiota and metabolic profile during fermentation of cigar tobacco (Nicotiana tabacum L.) leaves. Front. Genet. 2025, 16:1662815.
3. Xiaofang Xie, Xuansong Yang, Libin Lu, Tong Li, Mingyue Qin, Huazhong Guan, Yan Zheng, Tao Lan* and Weiren Wu*. Exploring the molecular mechanism of OsROS1a in regulating resistance to bacterial leaf streak through transcriptome and DNA methylation profiling in rice (Oryza sativa L.). BMC Genomics, 2025: 26:713
4. Ruiqi Wang†, Binghui Zhang†, Gang Gu, Jianfeng Lin, Wenwei Zhang, Dongwang He, FeiWang, LiaoJin* and Xiaofang Xie* (2025). Multiomics provides insights into dynamic changes of aromatic profile during flue-curing process in tobacco (Nicotiana tabacum L.) leaves, BMC Plant Biology, 25:244
5. Ruiqi Wang, Chaofan Du, Gang Gu, Binghui Zhang, Xiaolu Lin, Chengliang Chen, Tong Li, Rui Chen and Xiaofang Xie* (2024). Genome-wide identification and expression analysis of the ADH gene family under diverse stresses in tobacco (Nicotiana tabacum L.). BMC Genomics, 25:13
6. Tong Li, Wenbin Luo, Chaofan Du, Xiaolu Lin, Guojian Lin, Rui Chen, Huaqin He, Ruiqi Wang, Libing Lu and Xiaofang Xie*(2024). Functional and evolutionary comparative analysis of the DIR gene family in Nicotiana tabacum L. and Solanum tuberosum L. BMC Genomics. 25:671.
7. Chen R, Gu G, Zhang B, Du C, Lin X, Cai W, Zheng Y, Li T, Wang R and Xie X (2024) Genome-wide identification and expression analysis of the U-box E3 ubiquitin ligase gene family related to bacterial wilt resistance in tobacco (Nicotiana tabacum L.) and eggplant (Solanum melongena L.). Front. Plant 12ci. 15:1425651.
8. Xie, X., Zheng, Y., Lu, L.,Yuan, J., Hu, J., Bu, S., Lin, Y., Liu, Y., Guan, H., Wu, W.* (2021). Genome-Wide Association Study of QTLs Conferring Resistance to Bacterial Leaf Streak in Rice. Plants. 10, 2039.
9. Jiahan Yang, Binghui Zhang, Gang Gu, Jiazheng Yuan, Shaojun Shen, Liao Jin, Zhiqiang Lin, Jianfeng Lin, Xiaofang Xie* (2022). Genome-wide identification and expression analysis of the R2R3-MYB gene family in tobacco (Nicotiana Tabacum L.). BMC Genomics, 23(1), 1-21.
10. Binghui Zhang; Jiahan Yang; Gang Gu; Liao Jin; Chengliang Chen; Zhiqiang Lin; Jiangyu Song; Xiaofang Xie*(2021). Integrative analyses of biochemical properties and transcriptome reveal the dynamic changes in leaf senescence of tobacco (Nicotiana tabacum L.) Frontiers in Genetics, 12: 790167. doi: 10.3389/fgene.2021.790167
11. Xie, X., Zheng, Y., Lu, L.,Yuan, J., Hu, J., Bu, S., Lin, Y., Liu, Y., Guan, H., Wu, W.* (2021). Genome-Wide Association Study of QTLs Conferring Resistance to Bacterial Leaf Streak in Rice.Plants.10, 2039. https://doi.org/10.3390/ plants10102039
12. Qin M, Zhang B, Gu G, Yuan J,Yang X, Yang J and Xie X.* (2021). Genome-Wide Analysis of the G2-Like Transcription Factor Genes and Their Expression in Different Senescence Stages of Tobacco (Nicotiana tabacum L.). Front. Genet. 12:626352.doi: 10.3389/fgene.2021.626352
13. Yuexu Lin, Lishan Zhang, Jiazhen Chen, Tianzhi Nong, Fangting Xing, Xiangmin Lin, Xiaofang Xie* (2021). Physiological function and mechanism of zntR gene regulation in Aeromonas hydrophila.Acta Microbiologica Sinica, 61(9): 2765–2775. https://doi.org/10.13343/j.cnki.wsxb.20200684
14. Jiazhen Chen, Tianzhi Nong, Fangting Xing, Huamei Tang, Wenxiao Yang, Lishan Zhang, Xiangmin Lin*, Xiaofang Xie*(2021). Physiological function and mechanism mediated by ntrC in Aeromonas hydrophila.Acta Microbiologica Sinica, 61(12):4059-4069 https://doi.org/10.13343/j.cnki.wsxb.20210159
15. Xie, X., Zheng, Y., Lu, L.,Yuan, J., Hu, J., Bu, S., Lin, Y., Liu, Y., Guan, H., Wu, W.* (2021). Genome-Wide Association Study of QTLs Conferring Resistance to Bacterial Leaf Streak in Rice. Plants. 10, 2039.
16. Xie X., Chen Z., Zhang B., Guan H., Wu W.* (2020). Transcriptome analysis of xa5-mediated resistance to bacterial leaf streak in rice (oryza sativa l.). Scientific Reports, 10(1):19439
17. Yang X, Yuan J, Luo W, Qin M, Yang J,Wu W*, Xie X.* (2020). Genome-wide identification and expression analysis of the class III peroxidase gene family in potato (Solanum tuberosum L.). Frontiers in Genetics, December 3, 11:593577.doi: 10.3389/fgene.2020.593577
18. Ynng Jiahan, Zhang Binghui, Gu Gang, Yang Xuansong, Qin Mingyue, Xie Xiaofang*(2020). Acta Tabacaria Sinica,DOI:10.16472/j.chinatobacco.2020.174
19. Qin M, Luo W, Zheng Y, Guan H, Xie X.* (2019) Genome-wide identification and expression analysis of the PHD-finger gene family in Solanum tuberosum. PLoS ONE,2019,14(12):e0226964. https://doi.org/10.1371/journal.pone.0226964
20. Xiaofang Xie, Xiu-Qing Li, Bernie J. Zebarth, Suyan Niu, Ruimin Tang, Helen H.Tai, Benoit, Bizimungu, Muhammad Haroon. (2018). Rapid Screening of Potato Cultivars Tolerant to Nitrogen Deficiency Using a Hydroponic System, American Journal of Potato Research, 95:157-163