个人发表论文 Publication

发布者：张亮生发布时间：2018-08-28浏览次数：1034

发表论文:

*通讯作者，#第一作者

2018

1.Shanshan Dong, Chaoxian Zhao, Fei Chen, Yanhui Liu, Shouzhou Zhang, Hong Wu,Liangsheng Zhang* and Yang Liu*The complete mitochondrial genome of the early flowering plant Nymphaea colorata is highly repetitive with low recombination. BMC Genomics2018 DOI：10.1186/s12864-018-4991-4 

2.Dong W, Vannozzi Alessandro, Chen F, Zhang L*. MORC domain definition and evolutionary analysis of the MORC gene family in green plants. Genome Biology and Evolution. 2018 Jul 1;10(7):1730-1744. (IF=3.9).

3. Chen F*, Dong W, Zhang L*. realDB: a genome and transcriptome database for red algae. Database. 2018 Jan 1; 2018. doi: 10.1093/database/bay072(IF=3.9).

4. Chen F, Dong W, Zhang J, Guo X, Lin Z, Tang H and Zhang L.The sequenced angiosperm genomes and genome databases.Frontiers in Plant Science. 2018 Apr 13;9:418. doi: 10.3389/fpls.2018.00418

5. Fei Chen, Yue Hu, Alessandro Vannozzi, Kangcheng Wu, Hanyang Cai, Yuan Qin, AlisonMullis, Zhenguo Lin* &Liangsheng Zhang*. The WRKY transcription factor family in model plants and crops. Critical Reviews in Plant Sciences. Pages 311-335 | Published online: 05 Mar 2018

6. Wuyun TN#*, Wang L#, Liu H#, Wang X#, Zhang L#, Bennetzen JL, Li T, Yang L, Liu P, Du L, Wang L, Huang M, Qing J, Zhu L, Bao W, Li H, Du Q, Zhu J, Yang H, Yang S, Liu H, Yue H, Hu J, Yu G, Tian Y, Liang F, Hu J, Wang D, Gao R, Li D, Du H. The hardy rubber tree genome provides insights into the evolution of polyisoprene biosynthesis. Mol Plant. 2018 Mar 5;11(3):429-442. doi: 10.1016/j.molp.2017.11.014 封面文章

7. Xu M#, Chen Fei#, Qi S, Zhang L, Wu S. Loss or duplication of key regulatory genes coincides with environmental adaptation of the stomatal complex inNymphaea colorataandKalanchoe laxiflora. Hortic Res. 2018 Aug 1;5:42. doi: 10.1038/s41438-018-0048-

8.Klopfenstein DV,Zhang L, Pedersen BS, Ramírez F, Warwick Vesztrocy A, Naldi A, Mungall CJ, Yunes JM, Botvinnik O, Weigel M, Dampier W, Dessimoz C, Flick P, Tang H.GOATOOLS: A Python library for Gene Ontology analyses. Sci Rep. 2018 Jul 18;8(1):10872. doi: 10.1038/s41598-018-28948-z.

9.Ke M, Gao Z, Chen J, Qiu Y, Zhang L, Chen X.Auxin controls circadian flower opening and closure in the waterlily. BMC Plant Biol. 2018 Jul 11;18(1):143. doi: 10.1186/s12870-018-1357-7.

10.Chen F, Zhang L, Lin Z, Cheng ZM.Identification of a novel fused gene family implicates convergent evolution in eukaryotic calcium signaling. BMC Genomics. 2018 Apr 27;19(1):306. doi: 10.1186/s12864-018-4685-y.

11.Liu JP*, Hu J, Liu YH, Yang CP, Zhuang YF, Guo XL, Li YJ, Zhang L*.Transcriptome analysis ofHevea brasiliensisin response to exogenous methyl jasmonate provides novel insights into regulation of jasmonate-elicited rubber biosynthesis. Physiol Mol Biol Plants. 2018 May;24(3):349-358. doi: 10.1007/s12298-018-0529-0. Epub 2018 Apr 13.

12.Liang P, Saqib HSA, Zhang X,Zhang L, Tang H.Single-Base Resolution Map of Evolutionary Constraints and Annotation of Conserved Elements across Major Grass Genomes. Genome Biol Evol. 2018 Feb 1;10(2):473-488. doi: 10.1093/gbe/evy006.

2017

  1. Sun ZC, Zhang L*, Wang ZJ*Genome-wide analysis of miRNAs in Carya cathayensis. BMC Plant Biology. 2017 Nov 29;17(1):228. doi: 10.1186/s12870-017-1180-6. (IF=3.96，二区)

  2. Chen F, Liu X, Yu C, Chen Y, Tang H, Zhang L*.Water lilies as emerging models for Darwin's abominable mystery. Horticulture Research. 2017 Oct 4;4:17051. doi: 10.1038/hortres.2017.51 (IF=4.16，一区)

  3. Chen F, Zhang X, Liu X, Zhang L*. Evolutionary Analysis of MIKCc-Type MADS-Box Genes in Gymnosperms and Angiosperms. Frontiers in Plant Science. 2017 May 30;8:895. doi: 10.3389/fpls.2017.00895. eCollection 2017. (IF=4.30，二区).

  4. Sun Z, Li Z, Huang J, Zheng B, Zhang L*, Wang Z*. Genome-wide comparative analysis of LEAFY promoter sequence in angiosperms. Physiol Mol Biol Plants. 2017 Jan;23(1):23-33. doi: 10.1007/s12298-016-0393-8.

  5. Fu X, Li J, Tian Y, Quan W, Zhang S, Liu Q, Liang F, Zhu X, Zhang L, Wang D, Hu J Long-read sequence assembly of the firefly Pyrocoelia pectoralis genome.Gigascience. 2017 Nov 24. doi: 10.1093/gigascience/gix11

  6. Chen F, Zhang L, Cheng ZM. The calmodulin fused kinase novel gene family is the major system in plants converting Ca2+ signals to protein phosphorylation responses.Scientific Reports. 2017 Jun 23;7(1):4127. doi: 10.1038/s41598-017-03367-8 （IF=4.26）

2016

  1. Han Y, Li X, Cheng L, Liu Y, Wang H, Ke D, Yuan H, Zhang L* and Wang L* Genome-Wide Analysis of Soybean JmjC Domain-Containing Proteins Suggests Evolutionary Conservation Following Whole-Genome Duplication. Frontiers in Plant Science, 2016, 7:1800.(IF=4.30，二区).

  2. Zhang J, Tian Y, Yan L, Zhang G, Wang X, Zeng Y, Zhang J, Ma X, Tan Y, Long N, Wang Y, Ma Y, He Y, Xue Y, Hao S, Yang S, Wang W, Zhang L*, Dong Y*, Chen W*, Sheng J*. Genome of plant maca (Lepidium meyenii) illuminates genomic basis for high altitude adaptation in the central Andes. Molecular Plant.2016, 9(7):1066-77(IF:8.83，大一区)被《 2016中国植物科学若干领域重要研究进展》报道）

  3. Zhang L#*, Fei Chen#, GQ Zhang, YQ Zhang, ZG Lin, ZM Cheng*, ZJ Liu*. Origin and mechanism of crassulacean acid metabolism in orchids as implied by comparative transcriptomics and genomics of the carbon fixation pathway. Plant Journal.2016, 86(2):175-85.（IF:5.96，一区)被《 2016中国植物科学若干领域重要研究进展》报道）

  4. Deng H#, Zhang L#, Zhang G, Zheng B, Liu Z, Wang Y, Evolutionary history of PEPC genes in green plants: Implications for the evolution of CAM in orchids,Molecular Phylogenetics and Evolution. 2016, 94(Pt B):559-64 (IF=3.91，二区). 被《 2016中国植物科学若干领域重要研究进展》报道）

  5. Zhang GQ, …….Zhang L†, ……., Liu ZJ. The Dendrobium catenatum Lindl. genome sequence provides insights into polysaccharide synthase, floral development and adaptive evolution.Scientific Reports. 2016, 12;6:19029. (IF=4.26).

  6. Zhong Z, Norvienyeku J, Chen M, Bao J, Lin L, Chen L, Lin Y, Wu X, Cai Z, Zhang Q, Lin X, Hong Y, Huang J, Xu L, Zhang H, Chen L, Tang W, Zheng H, Chen X, Wang Y, Lian B, Zhang L, Tang H, Lu G, Ebbole DJ, Wang B, Wang Z. Directional Selection from Host Plants Is a Major Force Driving Host Specificity in Magnaporthe Species.Scientific Reports. 2016, 6;6:25591(IF=4.26).

    2015

  7. Tang H, Bomhoff MD, Briones E, Zhang L, Schnable JC, Lyons E5. SynFind: Compiling Syntenic Regions across Any Set of Genomes on Demand. Genome Biology and Evolution.2015, 7(12):3286–3298. (IF=4.23，二区).

  8. Niu B, Wang L, Zhang L, Ren D, Ren R, Copenhaver GP, Ma H, Wang Y. Arabidopsis Cell Division Cycle 20.1 Is Required for Normal Meiotic Spindle Assembly and Chromosome Segregation. Plant Cell. 2015, 27(12):3367-82. (IF=8.69，大一区).

  9. Qian S, Wang Y, Ma H*, Zhang L*. Expansion and functional divergence of JmjC-containing histone demethylases: significance of duplications in ancestral angiosperms and vertebrates. Plant Physiology2015,168: 1321-1337(5 IF:8.04，大一区)

  10. Li Q, Zhang N, Zhang L*, Ma H*: Differential evolution of members of the rhomboid gene family with conservative and divergent patterns. New Phytologist2015,206: 368-380 (IF=7.67，大一区).

  11. Zhang L, Wang L, Cui J, Cheng F, Wang YX, Ma H: Analysis of Arabidopsis floral transcriptome: detection of new florally expressed genes and expansion of Brassicaceae-specific gene families. Frontiers in Plant Science,2015, 5: 802, (IF=4.30，二区).

2012~2014

  1. Zhang L, Ma H: Complex evolutionary history and diverse domain organization of SET domain proteins suggestion divergent regulatory interactions. New Phytologist 2012, 195:248-263. (IF=7.67，大一区)

  2. Zhang L, Zhang Z, Weng Z, Shi W: Substitution Rates of the Internal Genes in the Novel Avian H7N9 Influenza Virus. Clinical Infectious Diseases,2013,57(8):1213-1215, . (IF:8.89，大一区)

  3. Zhang L*, Zhang Z, Weng Z: Rapid Reassortment of Internal Genes in Avian Influenza A(H7N9) Virus. Clinical Infectious Diseases, 2013, 57(7):1059-1061.(IF:8.89,大一区)

  4. Lei L, Zhou S, Ma H*,Zhang L*: Expansion and Diversification of SET Domain Gene Family following Whole-Genome Duplications in Populus. BMC Evolutionary Biology2012, 12:51. (IF=3.41，三区)

  5. Dong X, Wang X, Zhang L, Yang Z, Xin X, Wu S, Sun C, Liu J, Yang J, Luo X: Identification and characterization of OsEBS, a gene involved in enhanced plant biomass and spikelet number in rice. Plant Biotechnology Journal 2013, 11(9):1044-1057.(IF:5.75，一区)